Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006647.1 Corchorus olitorius cultivar O-4 contig06672, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2833
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.32


Found at i:311 original size:16 final size:16

Alignment explanation


    Indices: 286--317  Score: 55
    Period size: 16  Copynumber: 2.0  Consensus size: 16

        276 ATCCTGATTT

                 *          
        286 TTCAGGGCTTTTCTGC
          1 TTCAGAGCTTTTCTGC

                            
        302 TTCAGAGCTTTTCTGC
          1 TTCAGAGCTTTTCTGC

        318 CTTGTAGAGT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   15  1.00

ACGTcount: A:0.09, C:0.25, G:0.22, T:0.44


Consensus pattern (16 bp):   
TTCAGAGCTTTTCTGC
Done.