Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006654.1 Corchorus olitorius cultivar O-4 contig06679, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 930

Length: 1551
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34


Found at i:348 original size:20 final size:20

Alignment explanation


    Indices: 307--349  Score: 59
    Period size: 20  Copynumber: 2.1  Consensus size: 20

        297 CTCTCACAAG

                        *    *  
        307 TTTCTAGCCGTTGGAGCTCT
          1 TTTCTAGCCGTTAGAGCACT

                         *      
        327 TTTCTAGCCGTTATAGCACT
          1 TTTCTAGCCGTTAGAGCACT

               
        347 TTT
          1 TTT

        350 TCCACTTTTT


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.14, C:0.23, G:0.19, T:0.44


Consensus pattern (20 bp):   
TTTCTAGCCGTTAGAGCACT
Done.