Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006657.1 Corchorus olitorius cultivar O-4 contig06682, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 678

Length: 1130
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.40


Found at i:822 original size:15 final size:15

Alignment explanation


    Indices: 802--830  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

        792 ACCGTCTAAG

                           
        802 TATAGTATTGATTAA
          1 TATAGTATTGATTAA

                          
        817 TATAGTATTGATTA
          1 TATAGTATTGATTA

        831 GTTCTTGTCA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.38, C:0.00, G:0.14, T:0.48


Consensus pattern (15 bp):   
TATAGTATTGATTAA
Done.