Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006660.1 Corchorus olitorius cultivar O-4 contig06685, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 771

Length: 1286
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35


Found at i:609 original size:13 final size:12

Alignment explanation


    Indices: 560--606  Score: 67
    Period size: 12  Copynumber: 3.8  Consensus size: 12

        550 CATCGATACC

                        
        560 TCGATATATCCG
          1 TCGATATATCCG

              *         
        572 TCAATATATCCG
          1 TCGATATATCCG

                      * 
        584 TCGATATATCTG
          1 TCGATATATCCG

                       
        596 TTCGATATATC
          1 -TCGATATATC

        607 TGTGGATATC


Statistics
Matches: 31,  Mismatches: 3, Indels: 1
        0.89            0.09        0.03

Matches are distributed among these distances:
  12   21  0.68
  13   10  0.32

ACGTcount: A:0.28, C:0.21, G:0.13, T:0.38


Consensus pattern (12 bp):   
TCGATATATCCG
Done.