Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006663.1 Corchorus olitorius cultivar O-4 contig06688, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 777

Length: 1295
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.37


Found at i:114 original size:36 final size:36

Alignment explanation


    Indices: 67--136  Score: 106
    Period size: 36  Copynumber: 1.9  Consensus size: 36

         57 GAGATTTTGG

                         *                       
         67 AGAAATATGATAATCAAAAGT-ACAAAAAATGTAATA
          1 AGAAATATGATAACCAAAA-TCACAAAAAATGTAATA

                                       *      
        103 AGAAATATGATAACCAAAATCACAAAAGATGTAA
          1 AGAAATATGATAACCAAAATCACAAAAAATGTAA

        137 GGTTATTGAA


Statistics
Matches: 31,  Mismatches: 2, Indels: 2
        0.89            0.06        0.06

Matches are distributed among these distances:
  35    1  0.03
  36   30  0.97

ACGTcount: A:0.60, C:0.09, G:0.11, T:0.20


Consensus pattern (36 bp):   
AGAAATATGATAACCAAAATCACAAAAAATGTAATA
Done.