Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006664.1 Corchorus olitorius cultivar O-4 contig06689, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 624

Length: 1041
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28


Found at i:603 original size:18 final size:18

Alignment explanation


    Indices: 570--632  Score: 56
    Period size: 18  Copynumber: 3.4  Consensus size: 18

        560 CTGGCCCGAA

                   * *        
        570 AAAGGAAAAAAAAAAGAC
          1 AAAGGAAGAGAAAAAGAC

                              *
        588 ATAAGGAA-AGAAAAAGAG
          1 A-AAGGAAGAGAAAAAGAC

                      *      *
        606 AAAGGAAGAGGAAAAGAA
          1 AAAGGAAGAGAAAAAGAC

                     
        624 AAAGAGAAG
          1 AAAG-GAAG

        633 TAAATAGAAA


Statistics
Matches: 38,  Mismatches: 4, Indels: 5
        0.81            0.09        0.11

Matches are distributed among these distances:
  17    6  0.16
  18   22  0.58
  19   10  0.26

ACGTcount: A:0.70, C:0.02, G:0.27, T:0.02


Consensus pattern (18 bp):   
AAAGGAAGAGAAAAAGAC
Done.