Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006665.1 Corchorus olitorius cultivar O-4 contig06690, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 640

Length: 1067
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.25


Found at i:317 original size:10 final size:10

Alignment explanation


    Indices: 302--326  Score: 50
    Period size: 10  Copynumber: 2.5  Consensus size: 10

        292 CAGAGTACAT

                      
        302 AAACATAATG
          1 AAACATAATG

                      
        312 AAACATAATG
          1 AAACATAATG

                 
        322 AAACA
          1 AAACA

        327 ACACTAAAAT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   15  1.00

ACGTcount: A:0.64, C:0.12, G:0.08, T:0.16


Consensus pattern (10 bp):   
AAACATAATG

Found at i:979 original size:17 final size:16

Alignment explanation


    Indices: 925--975  Score: 66
    Period size: 17  Copynumber: 3.1  Consensus size: 16

        915 GATCACCCCC

                   *         
        925 AGATCACTAGTGATCTA
          1 AGATCACCAGTGATC-A

                             
        942 AGATCACCAGTGATGCA
          1 AGATCACCAGTGAT-CA

                    *       
        959 AGATCACCGGTGATCA
          1 AGATCACCAGTGATCA

             
        975 A
          1 A

        976 AGATTACATG


Statistics
Matches: 31,  Mismatches: 2, Indels: 3
        0.86            0.06        0.08

Matches are distributed among these distances:
  16    3  0.10
  17   27  0.87
  18    1  0.03

ACGTcount: A:0.35, C:0.22, G:0.22, T:0.22


Consensus pattern (16 bp):   
AGATCACCAGTGATCA
Done.