Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006667.1 Corchorus olitorius cultivar O-4 contig06692, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 746

Length: 1244
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.32


Found at i:215 original size:16 final size:16

Alignment explanation


    Indices: 163--215  Score: 54
    Period size: 16  Copynumber: 3.3  Consensus size: 16

        153 AGAAATTGAC

                      *  *  
        163 TTAAATAAACTAATTA
          1 TTAAATAAACAAACTA

                           * 
        179 -TAAACTAAACAAACAA
          1 TTAAA-TAAACAAACTA

            *               
        195 ATAAATAAACAAACTA
          1 TTAAATAAACAAACTA

                 
        211 TTAAA
          1 TTAAA

        216 CCCACATTAC


Statistics
Matches: 30,  Mismatches: 5, Indels: 4
        0.77            0.13        0.10

Matches are distributed among these distances:
  15    4  0.13
  16   22  0.73
  17    4  0.13

ACGTcount: A:0.64, C:0.11, G:0.00, T:0.25


Consensus pattern (16 bp):   
TTAAATAAACAAACTA

Found at i:745 original size:21 final size:22

Alignment explanation


    Indices: 715--755  Score: 57
    Period size: 22  Copynumber: 1.9  Consensus size: 22

        705 ATAATCTATT

                        *         
        715 AAAAAGTTT-AATAAATAAATA
          1 AAAAAGTTTAAACAAATAAATA

                 *              
        736 AAAAATTTTAAACAAATAAA
          1 AAAAAGTTTAAACAAATAAA

        756 ATTATCTTTA


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  21    8  0.47
  22    9  0.53

ACGTcount: A:0.68, C:0.02, G:0.02, T:0.27


Consensus pattern (22 bp):   
AAAAAGTTTAAACAAATAAATA
Done.