Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006673.1 Corchorus olitorius cultivar O-4 contig06698, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 616

Length: 1027
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32


Found at i:249 original size:42 final size:43

Alignment explanation


    Indices: 198--291  Score: 147
    Period size: 45  Copynumber: 2.2  Consensus size: 43

        188 AGTGCATTAC

                                    *                  
        198 CTAA-ATTCTACTC-CATCTCTAGGTAATTCATCAAAATAAAA
          1 CTAATATTCTACTCTCATCTCTAGATAATTCATCAAAATAAAA

                                                         
        239 CTAATATTCTACTCTTTCATCTCTAGATAATTCATCAAAATAAAA
          1 CTAATATTCTACTC--TCATCTCTAGATAATTCATCAAAATAAAA

                    
        284 CTAATATT
          1 CTAATATT

        292 AATTGTTTAC


Statistics
Matches: 48,  Mismatches: 1, Indels: 4
        0.91            0.02        0.08

Matches are distributed among these distances:
  41    4  0.08
  42    9  0.19
  45   35  0.73

ACGTcount: A:0.40, C:0.20, G:0.03, T:0.36


Consensus pattern (43 bp):   
CTAATATTCTACTCTCATCTCTAGATAATTCATCAAAATAAAA
Done.