Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006683.1 Corchorus olitorius cultivar O-4 contig06708, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 778

Length: 1297
ACGTcount: A:0.38, C:0.20, G:0.12, T:0.29


Found at i:610 original size:60 final size:60

Alignment explanation


    Indices: 487--688  Score: 253
    Period size: 60  Copynumber: 3.3  Consensus size: 60

        477 CCCAAAGCAT

                 *                    *   *       **   *          *       
        487 AAGAAGCCCATAAGGCCCAATCAACACAACCAATATATTGCAAGTTTAAGCCCACA-TATAA
          1 AAGAAACCCATAAGGCCCAA-CAACAAAACAAATATATAACAAATTTAAGCCCAAATTA-AA

                          *                                 *           
        548 AAGAAACCCATAAGACCCAACAACAAAACAAATATATAACAAATTTAAACCCAAATTAAA
          1 AAGAAACCCATAAGGCCCAACAACAAAACAAATATATAACAAATTTAAGCCCAAATTAAA

                        *          *                 *   *               
        608 AAGAAACCCATATGGCCCAACAAAAAAACAAATATATAACATATTGAAGCCCAAATTCAAA
          1 AAGAAACCCATAAGGCCCAACAACAAAACAAATATATAACAAATTTAAGCCCAAATT-AAA

                                
        669 AAGAAACCCATAAGGCCCAA
          1 AAGAAACCCATAAGGCCCAA

        689 TATCAAATTT


Statistics
Matches: 123,  Mismatches: 16, Indels: 4
        0.86            0.11        0.03

Matches are distributed among these distances:
  60   81  0.66
  61   42  0.34

ACGTcount: A:0.52, C:0.24, G:0.08, T:0.15


Consensus pattern (60 bp):   
AAGAAACCCATAAGGCCCAACAACAAAACAAATATATAACAAATTTAAGCCCAAATTAAA
Done.