Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006687.1 Corchorus olitorius cultivar O-4 contig06712, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1893
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32


Found at i:556 original size:21 final size:21

Alignment explanation


    Indices: 532--648  Score: 148
    Period size: 21  Copynumber: 5.6  Consensus size: 21

        522 TCTAGGCATT

                    *    *       
        532 TCCAATGAGCTTGAAACCTTC
          1 TCCAATGAACTTGGAACCTTC

                    *            
        553 TCCAATGATCTTGGAACCTTC
          1 TCCAATGAACTTGGAACCTTC

                         *     * 
        574 TCCAATGAACTTGTAACCTGC
          1 TCCAATGAACTTGGAACCTTC

                                  
        595 TCCAATGAACTTGGAA-CTTGC
          1 TCCAATGAACTTGGAACCTT-C

                    *             
        616 TCCAATGAGCTTGGAA-CTTGC
          1 TCCAATGAACTTGGAACCTT-C

                        
        637 TCCAATGAACTT
          1 TCCAATGAACTT

        649 CTAGCATCTT


Statistics
Matches: 86,  Mismatches: 9, Indels: 2
        0.89            0.09        0.02

Matches are distributed among these distances:
  20    2  0.02
  21   84  0.98

ACGTcount: A:0.27, C:0.26, G:0.16, T:0.30


Consensus pattern (21 bp):   
TCCAATGAACTTGGAACCTTC

Done.