Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006688.1 Corchorus olitorius cultivar O-4 contig06713, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 706

Length: 1178
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.37


Found at i:254 original size:36 final size:36

Alignment explanation


    Indices: 207--276  Score: 104
    Period size: 36  Copynumber: 1.9  Consensus size: 36

        197 GAGATTTTGG

                         *   *  *               
        207 AGAAATATGATAATCAAGATTACAAAAAATGTAATT
          1 AGAAATATGATAACCAAAATCACAAAAAATGTAATT

                                       *      
        243 AGAAATATGATAACCAAAATCACAAAAGATGTAA
          1 AGAAATATGATAACCAAAATCACAAAAAATGTAA

        277 GGTTATTGAA


Statistics
Matches: 30,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  36   30  1.00

ACGTcount: A:0.57, C:0.09, G:0.11, T:0.23


Consensus pattern (36 bp):   
AGAAATATGATAACCAAAATCACAAAAAATGTAATT
Done.