Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000670.1 Corchorus olitorius cultivar O-4 contig00670, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 897

Length: 1496
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31


Found at i:1405 original size:26 final size:26

Alignment explanation


    Indices: 1375--1432  Score: 107
    Period size: 26  Copynumber: 2.2  Consensus size: 26

       1365 ACCTTTAGTG

                                      
       1375 TTGCATTTAGCATATCATATCTTGCA
          1 TTGCATTTAGCATATCATATCTTGCA

                      *               
       1401 TTGCATTTAGTATATCATATCTTGCA
          1 TTGCATTTAGCATATCATATCTTGCA

                  
       1427 TTGCAT
          1 TTGCAT

       1433 ATTGATTAAT


Statistics
Matches: 31,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  26   31  1.00

ACGTcount: A:0.26, C:0.17, G:0.12, T:0.45


Consensus pattern (26 bp):   
TTGCATTTAGCATATCATATCTTGCA

Done.