Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006701.1 Corchorus olitorius cultivar O-4 contig06726, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1766
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.39


Found at i:725 original size:22 final size:22

Alignment explanation


    Indices: 700--760  Score: 95
    Period size: 22  Copynumber: 2.8  Consensus size: 22

        690 CATAGGTAAA

                                * 
        700 TTATCAAAATTTCATAACATGG
          1 TTATCAAAATTTCATAACATAG

                        *    *    
        722 TTATCAAAATTTAATAAGATAG
          1 TTATCAAAATTTCATAACATAG

                             
        744 TTATCAAAATTTCATAA
          1 TTATCAAAATTTCATAA

        761 AAATATTCAA


Statistics
Matches: 35,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  22   35  1.00

ACGTcount: A:0.46, C:0.10, G:0.07, T:0.38


Consensus pattern (22 bp):   
TTATCAAAATTTCATAACATAG
Done.