Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006709.1 Corchorus olitorius cultivar O-4 contig06734, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 771

Length: 1286
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31


Found at i:532 original size:6 final size:6

Alignment explanation


    Indices: 516--546  Score: 53
    Period size: 6  Copynumber: 5.2  Consensus size: 6

        506 CTCAAGGATG

                   *                            
        516 CAATCC GAATCC CAATCC CAATCC CAATCC C
          1 CAATCC CAATCC CAATCC CAATCC CAATCC C

        547 GAAGTCGAAG


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   6   23  1.00

ACGTcount: A:0.32, C:0.48, G:0.03, T:0.16


Consensus pattern (6 bp):   
CAATCC

Done.