Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006712.1 Corchorus olitorius cultivar O-4 contig06737, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 650

Length: 1084
ACGTcount: A:0.35, C:0.13, G:0.14, T:0.38


Found at i:404 original size:31 final size:28

Alignment explanation


    Indices: 334--412  Score: 77
    Period size: 31  Copynumber: 2.6  Consensus size: 28

        324 AAGTTTAGTT

                                       *
        334 TACCAATAATAATGAATTTTTTTTTAAT
          1 TACCAATAATAATGAATTTTTTTTTAAA

                               *              
        362 TCACCAAAATAATAATGACTTTTTTTTTTAGGAA
          1 T-ACC--AATAATAATGA-ATTTTTTTTTA--AA

                      *      
        396 TACCAATAATGATGAAT
          1 TACCAATAATAATGAAT

        413 AATTGTTCAA


Statistics
Matches: 41,  Mismatches: 4, Indels: 10
        0.75            0.07        0.18

Matches are distributed among these distances:
  28    1  0.02
  29    3  0.07
  30    1  0.02
  31   21  0.51
  32   10  0.24
  33    3  0.07
  34    2  0.05

ACGTcount: A:0.41, C:0.10, G:0.08, T:0.42


Consensus pattern (28 bp):   
TACCAATAATAATGAATTTTTTTTTAAA
Done.