Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006717.1 Corchorus olitorius cultivar O-4 contig06742, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 872

Length: 1454
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.32


Found at i:904 original size:33 final size:33

Alignment explanation


    Indices: 862--958  Score: 101
    Period size: 33  Copynumber: 2.9  Consensus size: 33

        852 CCTAATTTGA

                            *                 
        862 GTGTTGTTTGTGATGACACTAAA-TCTGTTTTAG
          1 GTGTTGTTTGTGATGAAAC-AAATTCTGTTTTAG

                        *                    
        895 GTGTTGTTTGTGGTGAAACAAATTCTGTTTT-G
          1 GTGTTGTTTGTGATGAAACAAATTCTGTTTTAG

                * **                         
        927 GATGCTAATTGTGATGAAAACAAA-TCTGTTTT
          1 G-TGTTGTTTGTGATG-AAACAAATTCTGTTTT

        959 GGTTGACCAT


Statistics
Matches: 55,  Mismatches: 6, Indels: 6
        0.82            0.09        0.09

Matches are distributed among these distances:
  32    5  0.09
  33   43  0.78
  34    7  0.13

ACGTcount: A:0.25, C:0.08, G:0.24, T:0.43


Consensus pattern (33 bp):   
GTGTTGTTTGTGATGAAACAAATTCTGTTTTAG
Done.