Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006718.1 Corchorus olitorius cultivar O-4 contig06743, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 868

Length: 1447
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31


Found at i:847 original size:6 final size:6

Alignment explanation


    Indices: 814--844  Score: 53
    Period size: 6  Copynumber: 5.2  Consensus size: 6

        804 CAAATCAAAT

                                         *      
        814 AGAAAA AGAAAA AGAAAA AGAAAA ATAAAA A
          1 AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA A

        845 TAATACACAA


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03


Consensus pattern (6 bp):   
AGAAAA
Done.