Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006723.1 Corchorus olitorius cultivar O-4 contig06748, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2097
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.31


Found at i:1613 original size:28 final size:27

Alignment explanation


    Indices: 1581--1645  Score: 78
    Period size: 27  Copynumber: 2.4  Consensus size: 27

       1571 AGTTACAATT

                                     *   
       1581 TTACCCTTGGGTAGGT-AAAATTACTAAA
          1 TTACCCTTGGG-A-GTCAAAATTACGAAA

                        *  *           
       1609 TTACCCTTGGGATTCTAAATTACGAAA
          1 TTACCCTTGGGAGTCAAAATTACGAAA

                      
       1636 TTACCCTTGG
          1 TTACCCTTGG

       1646 AGGAAGAATT


Statistics
Matches: 33,  Mismatches: 3, Indels: 3
        0.85            0.08        0.08

Matches are distributed among these distances:
  26    1  0.03
  27   21  0.64
  28   11  0.33

ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34


Consensus pattern (27 bp):   
TTACCCTTGGGAGTCAAAATTACGAAA
Done.