Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000673.1 Corchorus olitorius cultivar O-4 contig00673, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 981

Length: 1635
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.36


Found at i:862 original size:36 final size:37

Alignment explanation


    Indices: 771--892  Score: 169
    Period size: 36  Copynumber: 3.3  Consensus size: 37

        761 TTTTTATTTA

                                     *              
        771 TTTTCTTTTTTCTGACCTCTCTT-TGTTTTAGG-CCAAGT
          1 TTTTCTTTTTTC-GACCTCT-TTCTATTTTAGGTCC-AGT

                       *                         
        809 TTTTCTTTTTTTGACCTCTTTCTATTTTAGGTCCAGT
          1 TTTTCTTTTTTCGACCTCTTTCTATTTTAGGTCCAGT

                                                 
        846 TTTTC-TTTTTCGACCTCTTTCTATTTTAGGTCCAGT
          1 TTTTCTTTTTTCGACCTCTTTCTATTTTAGGTCCAGT

                *      
        882 TTTTTTTTTTT
          1 TTTTCTTTTTT

        893 AGCTCCTTCT


Statistics
Matches: 77,  Mismatches: 4, Indels: 7
        0.88            0.05        0.08

Matches are distributed among these distances:
  36   36  0.47
  37   28  0.36
  38   13  0.17

ACGTcount: A:0.10, C:0.19, G:0.11, T:0.61


Consensus pattern (37 bp):   
TTTTCTTTTTTCGACCTCTTTCTATTTTAGGTCCAGT
Done.