Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006733.1 Corchorus olitorius cultivar O-4 contig06758, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 741

Length: 1236
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.34


Found at i:668 original size:16 final size:16

Alignment explanation


    Indices: 650--725  Score: 82
    Period size: 16  Copynumber: 4.8  Consensus size: 16

        640 AATTTTGGGT

                           *
        650 ACCCGAACCCGAAATT
          1 ACCCGAACCCGAAATG

                   *      **
        666 ACCCGAATCC-AAACA
          1 ACCCGAACCCGAAATG

                             
        681 ACCCGAACCCGAAAATG
          1 ACCCGAACCCG-AAATG

                *     *     
        698 ACCCAAACCCAAAATG
          1 ACCCGAACCCGAAATG

                        
        714 ACCCGAACCCGA
          1 ACCCGAACCCGA

        726 TCAACCCGAC


Statistics
Matches: 48,  Mismatches: 10, Indels: 4
        0.77            0.16        0.06

Matches are distributed among these distances:
  15   12  0.25
  16   24  0.50
  17   12  0.25

ACGTcount: A:0.42, C:0.39, G:0.12, T:0.07


Consensus pattern (16 bp):   
ACCCGAACCCGAAATG
Done.