Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006751.1 Corchorus olitorius cultivar O-4 contig06776, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 680

Length: 1134
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.30


Found at i:404 original size:11 final size:11

Alignment explanation


    Indices: 388--413  Score: 52
    Period size: 11  Copynumber: 2.4  Consensus size: 11

        378 CCTTTGCCTA

                       
        388 AAAACTAGAAG
          1 AAAACTAGAAG

                       
        399 AAAACTAGAAG
          1 AAAACTAGAAG

                
        410 AAAA
          1 AAAA

        414 GAAATTATCT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   15  1.00

ACGTcount: A:0.69, C:0.08, G:0.15, T:0.08


Consensus pattern (11 bp):   
AAAACTAGAAG
Done.