Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006753.1 Corchorus olitorius cultivar O-4 contig06778, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 610

Length: 1018
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.36


Found at i:799 original size:58 final size:58

Alignment explanation


    Indices: 696--810  Score: 178
    Period size: 58  Copynumber: 2.0  Consensus size: 58

        686 ATAGCATCAT

                      *                                               
        696 GCCTTGGTCCTAAAACGTCTTTTTTAGGCATCTAATAAAAAAACATGTCACTCGATAA
          1 GCCTTGGTCCGAAAACGTCTTTTTTAGGCATCTAATAAAAAAACATGTCACTCGATAA

                                       *             *           *    
        754 GCCTTGGTCCGAAAACGTCTTTTTTTATGCATCTAAT-AAAGAACATGTCACTTGATA
          1 GCCTTGGTCCGAAAACGTC-TTTTTTAGGCATCTAATAAAAAAACATGTCACTCGATA

        811 TTTGATTAAT


Statistics
Matches: 52,  Mismatches: 4, Indels: 2
        0.90            0.07        0.03

Matches are distributed among these distances:
  58   36  0.69
  59   16  0.31

ACGTcount: A:0.32, C:0.20, G:0.15, T:0.33


Consensus pattern (58 bp):   
GCCTTGGTCCGAAAACGTCTTTTTTAGGCATCTAATAAAAAAACATGTCACTCGATAA
Done.