Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000676.1 Corchorus olitorius cultivar O-4 contig00676, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 743

Length: 1239
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27


Found at i:29 original size:22 final size:22

Alignment explanation


    Indices: 1--132  Score: 185
    Period size: 22  Copynumber: 6.0  Consensus size: 22

                                  
          1 GTAAAAGAAAGAGTAATCAGAA
          1 GTAAAAGAAAGAGTAATCAGAA

                                  
         23 GTAAAAGAAAGAGTAATCAG-A
          1 GTAAAAGAAAGAGTAATCAGAA

                   *           *  
         44 GTAAAAGGAAGAGTAATCAAAA
          1 GTAAAAGAAAGAGTAATCAGAA

             **                   
         66 GCCAAAGAAAGAGTAATCAGAA
          1 GTAAAAGAAAGAGTAATCAGAA

             * *                  
         88 GCAGAAGAAAGAGTAATCAGAA
          1 GTAAAAGAAAGAGTAATCAGAA

                      * *         
        110 GTAAAAGAAAAAATAATCAGAA
          1 GTAAAAGAAAGAGTAATCAGAA

             
        132 G
          1 G

        133 ATTAGAGTAA


Statistics
Matches: 97,  Mismatches: 12, Indels: 2
        0.87            0.11        0.02

Matches are distributed among these distances:
  21   19  0.20
  22   78  0.80

ACGTcount: A:0.58, C:0.07, G:0.23, T:0.12


Consensus pattern (22 bp):   
GTAAAAGAAAGAGTAATCAGAA
Done.