Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006763.1 Corchorus olitorius cultivar O-4 contig06788, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 867

Length: 1446
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.40


Found at i:1257 original size:100 final size:100

Alignment explanation


    Indices: 1126--1329  Score: 381
    Period size: 100  Copynumber: 2.0  Consensus size: 100

       1116 TTAATGGGTT

                 *                                                           
       1126 TATTTTTGTATGGTTTGTTTCTTTTTTGCAGGATTAAACAGGTATAATTGAGTCTTTGATTCTTA
          1 TATTTCTGTATGGTTTGTTTCTTTTTTGCAGGATTAAACAGGTATAATTGAGTCTTTGATTCTTA

                         *                     
       1191 GTTTTTTTCAATAGTTGATTGATTATTTATTTATA
         66 GTTTTTTTCAATAATTGATTGATTATTTATTTATA

                                                              *              
       1226 TATTTCTGTATGGTTTGTTTCTTTTTTGCAGGATTAAACAGGTATAATTGGGTCTTTGATTCTTA
          1 TATTTCTGTATGGTTTGTTTCTTTTTTGCAGGATTAAACAGGTATAATTGAGTCTTTGATTCTTA

                                               
       1291 GTTTTTTTCAATAATTGATTGATTATTTATTTATA
         66 GTTTTTTTCAATAATTGATTGATTATTTATTTATA

                
       1326 TATT
          1 TATT

       1330 GCTTTGGGAA


Statistics
Matches: 101,  Mismatches: 3, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
 100  101  1.00

ACGTcount: A:0.23, C:0.06, G:0.16, T:0.55


Consensus pattern (100 bp):   
TATTTCTGTATGGTTTGTTTCTTTTTTGCAGGATTAAACAGGTATAATTGAGTCTTTGATTCTTA
GTTTTTTTCAATAATTGATTGATTATTTATTTATA
Done.