Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006765.1 Corchorus olitorius cultivar O-4 contig06790, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 635

Length: 1059
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.31


Found at i:725 original size:5 final size:5

Alignment explanation


    Indices: 715--740  Score: 52
    Period size: 5  Copynumber: 5.2  Consensus size: 5

        705 TCGAAAATTT

                                           
        715 TTTTA TTTTA TTTTA TTTTA TTTTA T
          1 TTTTA TTTTA TTTTA TTTTA TTTTA T

        741 ATTTTTCGAT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   21  1.00

ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81


Consensus pattern (5 bp):   
TTTTA

Done.