Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000677.1 Corchorus olitorius cultivar O-4 contig00677, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 634

Length: 1057
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.35


Found at i:385 original size:13 final size:13

Alignment explanation


    Indices: 351--421  Score: 83
    Period size: 14  Copynumber: 5.3  Consensus size: 13

        341 TTGAAAACTC

                         
        351 AAAACC-TTTTTG
          1 AAAACCATTTTTG

                          
        363 AAAACTCATTTTTG
          1 AAAAC-CATTTTTG

                          
        377 AAAACCATTTCTTG
          1 AAAACCATTT-TTG

                           
        391 AAAA-CAGTTTCTTG
          1 AAAACCA-TTT-TTG

                *        
        405 AAAATCATTTTTG
          1 AAAACCATTTTTG

                
        418 AAAA
          1 AAAA

        422 AATCCTTTAT


Statistics
Matches: 54,  Mismatches: 0, Indels: 9
        0.86            0.00        0.14

Matches are distributed among these distances:
  12    5  0.09
  13   15  0.28
  14   32  0.59
  15    2  0.04

ACGTcount: A:0.39, C:0.14, G:0.08, T:0.38


Consensus pattern (13 bp):   
AAAACCATTTTTG

Done.