Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006775.1 Corchorus olitorius cultivar O-4 contig06800, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6309
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.36


Found at i:3049 original size:33 final size:35

Alignment explanation


    Indices: 3001--3065  Score: 91
    Period size: 33  Copynumber: 1.9  Consensus size: 35

       2991 AGCTATCCAA

                            *                  
       3001 TTGAATCGGATTTATTCTT-TTATT-TTTTTTGTC
          1 TTGAATCGGATTTATTATTATTATTATTTTTTGTC

                                             
       3034 TTGAATCGG-TGTTATTATTATTATTATTTTTT
          1 TTGAATCGGAT-TTATTATTATTATTATTTTTT

       3066 TGAGATAATG


Statistics
Matches: 28,  Mismatches: 1, Indels: 4
        0.85            0.03        0.12

Matches are distributed among these distances:
  32    1  0.04
  33   16  0.57
  34    5  0.18
  35    6  0.21

ACGTcount: A:0.18, C:0.06, G:0.12, T:0.63


Consensus pattern (35 bp):   
TTGAATCGGATTTATTATTATTATTATTTTTTGTC
Done.