Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006779.1 Corchorus olitorius cultivar O-4 contig06804, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1867
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31


Found at i:158 original size:25 final size:28

Alignment explanation


    Indices: 88--164  Score: 97
    Period size: 28  Copynumber: 2.9  Consensus size: 28

         78 AGCCCACATT

                  *        **           
         88 AACTAAAAAAAACTAGGGCCCAAACCTA
          1 AACTAAGAAAAACTAAAGCCCAAACCTA

                              *         
        116 AACTAAGAAAAACTAAAGTCCAAACCTA
          1 AACTAAGAAAAACTAAAGCCCAAACCTA

                                    
        144 AAC-AA-AAAAAC-AAAGCCCAAA
          1 AACTAAGAAAAACTAAAGCCCAAA

        165 TATGAAAACC


Statistics
Matches: 44,  Mismatches: 5, Indels: 3
        0.85            0.10        0.06

Matches are distributed among these distances:
  25    9  0.20
  26    6  0.14
  27    2  0.05
  28   27  0.61

ACGTcount: A:0.60, C:0.23, G:0.08, T:0.09


Consensus pattern (28 bp):   
AACTAAGAAAAACTAAAGCCCAAACCTA
Done.