Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006782.1 Corchorus olitorius cultivar O-4 contig06807, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 696

Length: 1160
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30


Found at i:280 original size:55 final size:55

Alignment explanation


    Indices: 192--302  Score: 143
    Period size: 55  Copynumber: 2.0  Consensus size: 55

        182 GATCAAACTT

                  *           *  *                      *          
        192 TCATTTGATTAGTGTTCTCATCTATTTGCGTCTTCGATTTATTTTTAATCCTAGA
          1 TCATTTCATTAGTGTTCTAATATATTTGCGTCTTCGATTTATTTCTAATCCTAGA

                                         *     *              *     
        247 TCATTTCATTAGTGTTGC-AATATATTTGTGTCTTGGATTTATTTCTAATTCTAGA
          1 TCATTTCATTAGTGTT-CTAATATATTTGCGTCTTCGATTTATTTCTAATCCTAGA

             
        302 T
          1 T

        303 GTTTGAATTT


Statistics
Matches: 48,  Mismatches: 7, Indels: 2
        0.84            0.12        0.04

Matches are distributed among these distances:
  55   47  0.98
  56    1  0.02

ACGTcount: A:0.22, C:0.14, G:0.14, T:0.51


Consensus pattern (55 bp):   
TCATTTCATTAGTGTTCTAATATATTTGCGTCTTCGATTTATTTCTAATCCTAGA
Done.