Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006793.1 Corchorus olitorius cultivar O-4 contig06818, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4073
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31


Found at i:2269 original size:21 final size:21

Alignment explanation


    Indices: 2245--2284  Score: 80
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       2235 TAATATACTA

                                 
       2245 GCTACAATGGTTACCAAACTG
          1 GCTACAATGGTTACCAAACTG

                               
       2266 GCTACAATGGTTACCAAAC
          1 GCTACAATGGTTACCAAAC

       2285 AAAATAGGAA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23


Consensus pattern (21 bp):   
GCTACAATGGTTACCAAACTG

Found at i:3108 original size:20 final size:20

Alignment explanation


    Indices: 3067--3109  Score: 59
    Period size: 20  Copynumber: 2.1  Consensus size: 20

       3057 CTCTCACAAG

                        *    *  
       3067 TTTCTAGCCGTTGGAGCTCT
          1 TTTCTAGCCGTTAGAGCACT

                         *      
       3087 TTTCTAGCCGTTATAGCACT
          1 TTTCTAGCCGTTAGAGCACT

               
       3107 TTT
          1 TTT

       3110 TCCACTTTTT


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.14, C:0.23, G:0.19, T:0.44


Consensus pattern (20 bp):   
TTTCTAGCCGTTAGAGCACT
Done.