Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006794.1 Corchorus olitorius cultivar O-4 contig06819, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1925
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.28


Found at i:589 original size:48 final size:47

Alignment explanation


    Indices: 514--654  Score: 178
    Period size: 49  Copynumber: 3.0  Consensus size: 47

        504 GAGCGTGCCA

                        *         *         *               
        514 ATCAATTTTGTCAAAAAATTGATAAAAAGTGCGA-TGAAAATTAAAAG
          1 ATCAATTTTGTCTAAAAATTGAGAAAAAGTGCAAGT-AAAATTAAAAG

                                                             
        561 ATCAATTTTGTCTTAAAAATTGAGAAAAAGATGCAAGTAAAATTAAAAG
          1 ATCAATTTTGTC-TAAAAATTGAGAAAAAG-TGCAAGTAAAATTAAAAG

            *           *                            *    
        610 TTCAATTTTGTAGTAAAAATTGAGAAAAAGTGC-AGTAAAAGTAAA
          1 ATCAATTTTGT-CTAAAAATTGAGAAAAAGTGCAAGTAAAATTAAA

        655 GGATTGCTTG


Statistics
Matches: 84,  Mismatches: 6, Indels: 8
        0.86            0.06        0.08

Matches are distributed among these distances:
  47   23  0.27
  48   18  0.21
  49   42  0.50
  50    1  0.01

ACGTcount: A:0.50, C:0.06, G:0.16, T:0.28


Consensus pattern (47 bp):   
ATCAATTTTGTCTAAAAATTGAGAAAAAGTGCAAGTAAAATTAAAAG

Done.