Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000068.1 Corchorus olitorius cultivar O-4 contig00068, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 641

Length: 1069
ACGTcount: A:0.45, C:0.08, G:0.09, T:0.37


Found at i:463 original size:32 final size:32

Alignment explanation


    Indices: 422--483  Score: 115
    Period size: 32  Copynumber: 1.9  Consensus size: 32

        412 GACATTTAAG

                                 *          
        422 AAATATATTCGAAAAATAAGGGTATAATAGAC
          1 AAATATATTCGAAAAATAAGGATATAATAGAC

                                          
        454 AAATATATTCGAAAAATAAGGATATAATAG
          1 AAATATATTCGAAAAATAAGGATATAATAG

        484 GTGATTCAAA


Statistics
Matches: 29,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  32   29  1.00

ACGTcount: A:0.55, C:0.05, G:0.15, T:0.26


Consensus pattern (32 bp):   
AAATATATTCGAAAAATAAGGATATAATAGAC
Done.