Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006801.1 Corchorus olitorius cultivar O-4 contig06826, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 871

Length: 1452
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32


Found at i:1442 original size:18 final size:17

Alignment explanation


    Indices: 1394--1451  Score: 62
    Period size: 18  Copynumber: 3.3  Consensus size: 17

       1384 TTCTTCTCTT

                *          * 
       1394 TTTCTTTTCTCTTTTCC
          1 TTTCCTTTCTCTTTTTC

                              
       1411 TCTTCCTTTCTCTTTTTC
          1 T-TTCCTTTCTCTTTTTC

                     *       *
       1429 TTTCCTTATGTCTTTTTT
          1 TTTCCTT-TCTCTTTTTC

                 
       1447 TTTCC
          1 TTTCC

       1452 C


Statistics
Matches: 35,  Mismatches: 4, Indels: 3
        0.83            0.10        0.07

Matches are distributed among these distances:
  17    7  0.20
  18   28  0.80

ACGTcount: A:0.02, C:0.28, G:0.02, T:0.69


Consensus pattern (17 bp):   
TTTCCTTTCTCTTTTTC
Done.