Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006809.1 Corchorus olitorius cultivar O-4 contig06834, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 660

Length: 1100
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.29


Found at i:1018 original size:23 final size:23

Alignment explanation


    Indices: 992--1038  Score: 67
    Period size: 23  Copynumber: 2.0  Consensus size: 23

        982 CTAAATTTCT

                     * *   *       
        992 AAGTTTAAATAGTCATCTCTATA
          1 AAGTTTAAACAATCAACTCTATA

                                   
       1015 AAGTTTAAACAATCAACTCTATA
          1 AAGTTTAAACAATCAACTCTATA

             
       1038 A
          1 A

       1039 TGCTAAATTT


Statistics
Matches: 21,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  23   21  1.00

ACGTcount: A:0.45, C:0.15, G:0.06, T:0.34


Consensus pattern (23 bp):   
AAGTTTAAACAATCAACTCTATA
Done.