Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006814.1 Corchorus olitorius cultivar O-4 contig06839, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 894

Length: 1491
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.39


Found at i:828 original size:21 final size:21

Alignment explanation


    Indices: 798--838  Score: 55
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        788 TCTAGATTAA

                 *        *      
        798 TTAATTTATTAATTTCATAAG
          1 TTAATATATTAATTCCATAAG

                      *         
        819 TTAATATATTGATTCCATAA
          1 TTAATATATTAATTCCATAA

        839 ATGAAGTTAT


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.39, C:0.07, G:0.05, T:0.49


Consensus pattern (21 bp):   
TTAATATATTAATTCCATAAG

Found at i:1065 original size:21 final size:23

Alignment explanation


    Indices: 1027--1078  Score: 65
    Period size: 21  Copynumber: 2.4  Consensus size: 23

       1017 AATAATTAGC

                       *      *    
       1027 ATATTAATTTAGATAAATTAA-T
          1 ATATTAATTTACATAAATGAAGT

                                   
       1049 ATATTAATTT-CATAAATGAAGT
          1 ATATTAATTTACATAAATGAAGT

                     
       1071 A-ATTAATT
          1 ATATTAATT

       1079 CTACCAAATA


Statistics
Matches: 27,  Mismatches: 2, Indels: 3
        0.84            0.06        0.09

Matches are distributed among these distances:
  21   15  0.56
  22   12  0.44

ACGTcount: A:0.48, C:0.02, G:0.06, T:0.44


Consensus pattern (23 bp):   
ATATTAATTTACATAAATGAAGT
Done.