Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006815.1 Corchorus olitorius cultivar O-4 contig06840, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 702

Length: 1170
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.28


Found at i:524 original size:76 final size:76

Alignment explanation


    Indices: 398--548  Score: 189
    Period size: 76  Copynumber: 2.0  Consensus size: 76

        388 ACAAGGACCC

                                                               *           * 
        398 CGACTCCACCTGGGCGCCCACATGGTTGCCTTGAGCACCCATGTGGTTTGCTTGAGAACCCAGGT
          1 CGACTCCACCTGGGCGCCCACATGGTTGCCTTGAGCACCCATGTGGTTTGCCTGAGAACCCAGAT

                       
        463 GGGCAGTGTCA
         66 GGGCAGTGTCA

                    *     *              *                 *         **      
        474 CGACTCCAGCTGGGTGCCCACATGGTTTGTC-TGAAG-ACCCATGTGTTTTGCCTGATCACCCAG
          1 CGACTCCACCTGGGCGCCCACATGG-TTGCCTTG-AGCACCCATGTGGTTTGCCTGAGAACCCAG

                  *     
        537 ATGGGCTGTGTC
         64 ATGGGCAGTGTC

        549 TTAGCTCATC


Statistics
Matches: 64,  Mismatches: 9, Indels: 4
        0.83            0.12        0.05

Matches are distributed among these distances:
  76   58  0.91
  77    6  0.09

ACGTcount: A:0.17, C:0.29, G:0.29, T:0.25


Consensus pattern (76 bp):   
CGACTCCACCTGGGCGCCCACATGGTTGCCTTGAGCACCCATGTGGTTTGCCTGAGAACCCAGAT
GGGCAGTGTCA
Done.