Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006820.1 Corchorus olitorius cultivar O-4 contig06845, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 886

Length: 1477
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32


Found at i:918 original size:1 final size:1

Alignment explanation


    Indices: 914--943  Score: 51
    Period size: 1  Copynumber: 30.0  Consensus size: 1

        904 AAATTTTTAG

                                  *       
        914 AAAAAAAAAAAAAAAAAAAAAAGAAAAAAA
          1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

        944 CCCTAAGGCA


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   1   27  1.00

ACGTcount: A:0.97, C:0.00, G:0.03, T:0.00


Consensus pattern (1 bp):   
A

Done.