Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006825.1 Corchorus olitorius cultivar O-4 contig06850, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1737
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38


Found at i:1047 original size:2 final size:2

Alignment explanation


    Indices: 1026--1074  Score: 62
    Period size: 2  Copynumber: 24.5  Consensus size: 2

       1016 TATCATGTAC

                     *      *     *                                  *    
       1026 AT AT AT TT AT AC AT AC AT AT AT AT AT AT AT AT AT AT AT GT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

                      
       1068 AT AT AT A
          1 AT AT AT A

       1075 GATTAAAAAA


Statistics
Matches: 39,  Mismatches: 8, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
   2   39  1.00

ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47


Consensus pattern (2 bp):   
AT

Done.