Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006829.1 Corchorus olitorius cultivar O-4 contig06854, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 788

Length: 1314
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.30


Found at i:311 original size:25 final size:25

Alignment explanation


    Indices: 292--362  Score: 124
    Period size: 25  Copynumber: 2.8  Consensus size: 25

        282 TAAACGCTCA

                         * *         
        292 TGTGCTTGCGTTTGGAAAACGAGCC
          1 TGTGCTTGCGTTTAGCAAACGAGCC

                                     
        317 TGTGCTTGCGTTTAGCAAACGAGCC
          1 TGTGCTTGCGTTTAGCAAACGAGCC

                                 
        342 TGTGCTTGCGTTTAGCAAACG
          1 TGTGCTTGCGTTTAGCAAACG

        363 CATGGGCTGC


Statistics
Matches: 44,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  25   44  1.00

ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30


Consensus pattern (25 bp):   
TGTGCTTGCGTTTAGCAAACGAGCC
Done.