Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006830.1 Corchorus olitorius cultivar O-4 contig06855, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 690

Length: 1150
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.38


Found at i:480 original size:11 final size:11

Alignment explanation


    Indices: 437--474  Score: 51
    Period size: 11  Copynumber: 3.5  Consensus size: 11

        427 TTCCTATATA

                *      
        437 AAATAAATTAT
          1 AAATTAATTAT

                        
        448 CAAA-TAATTAT
          1 -AAATTAATTAT

                       
        459 AAATTAATTAT
          1 AAATTAATTAT

                 
        470 AAATT
          1 AAATT

        475 TGTTATGAAT


Statistics
Matches: 24,  Mismatches: 1, Indels: 3
        0.86            0.04        0.11

Matches are distributed among these distances:
  10    3  0.12
  11   18  0.75
  12    3  0.12

ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39


Consensus pattern (11 bp):   
AAATTAATTAT
Done.