Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006831.1 Corchorus olitorius cultivar O-4 contig06856, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2264
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31


Found at i:1697 original size:29 final size:30

Alignment explanation


    Indices: 1650--1709  Score: 86
    Period size: 29  Copynumber: 2.0  Consensus size: 30

       1640 GAAGTTCTTG

                               *      *    
       1650 TTTGAAGACTCATTGAAGACTTATTTGAAGA
          1 TTTGAAGAC-CATTGAAGAATTATTTCAAGA

                                          
       1681 TTTGAAGA-CATTGAAGAATTATTTCAAGA
          1 TTTGAAGACCATTGAAGAATTATTTCAAGA

       1710 GGAAAGAATT


Statistics
Matches: 27,  Mismatches: 2, Indels: 2
        0.87            0.06        0.06

Matches are distributed among these distances:
  29   19  0.70
  31    8  0.30

ACGTcount: A:0.38, C:0.08, G:0.18, T:0.35


Consensus pattern (30 bp):   
TTTGAAGACCATTGAAGAATTATTTCAAGA
Done.