Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006838.1 Corchorus olitorius cultivar O-4 contig06863, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 663

Length: 1105
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36


Found at i:1075 original size:25 final size:25

Alignment explanation


    Indices: 1033--1080  Score: 69
    Period size: 25  Copynumber: 1.9  Consensus size: 25

       1023 ATGCAATATT

                      *  *           
       1033 AAATTAGATTTGAGCTACATGAATG
          1 AAATTAGATTGGAACTACATGAATG

                   *               
       1058 AAATTAGCTTGGAACTACATGAA
          1 AAATTAGATTGGAACTACATGAA

       1081 CGCAAAAATA


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  25   20  1.00

ACGTcount: A:0.42, C:0.10, G:0.19, T:0.29


Consensus pattern (25 bp):   
AAATTAGATTGGAACTACATGAATG
Done.