Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000684.1 Corchorus olitorius cultivar O-4 contig00684, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 741

Length: 1235
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.31


Found at i:875 original size:21 final size:22

Alignment explanation


    Indices: 851--908  Score: 82
    Period size: 23  Copynumber: 2.6  Consensus size: 22

        841 TGGGTCTAAA

                *                 
        851 AATATAATAGC-ATATATTATT
          1 AATAAAATAGCAATATATTATT

                                   
        872 AATAAAATAGCATATATATTATT
          1 AATAAAATAGCA-ATATATTATT

                     *    
        895 AATAAAATAACAAT
          1 AATAAAATAGCAAT

        909 TTCTCAATTT


Statistics
Matches: 33,  Mismatches: 2, Indels: 3
        0.87            0.05        0.08

Matches are distributed among these distances:
  21   10  0.30
  22    2  0.06
  23   21  0.64

ACGTcount: A:0.55, C:0.05, G:0.03, T:0.36


Consensus pattern (22 bp):   
AATAAAATAGCAATATATTATT
Done.