Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006841.1 Corchorus olitorius cultivar O-4 contig06866, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1696
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36


Found at i:1556 original size:25 final size:25

Alignment explanation


    Indices: 1520--1567  Score: 87
    Period size: 25  Copynumber: 1.9  Consensus size: 25

       1510 ATGCAATATT

                                     
       1520 AAATTAGATTTGAGCTACATGAATG
          1 AAATTAGATTTGAGCTACATGAATG

                   *               
       1545 AAATTAGCTTTGAGCTACATGAA
          1 AAATTAGATTTGAGCTACATGAA

       1568 CGCAAAATAC


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  25   22  1.00

ACGTcount: A:0.40, C:0.10, G:0.19, T:0.31


Consensus pattern (25 bp):   
AAATTAGATTTGAGCTACATGAATG
Done.