Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006842.1 Corchorus olitorius cultivar O-4 contig06867, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1850
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28


Found at i:1025 original size:19 final size:19

Alignment explanation


    Indices: 1001--1040  Score: 55
    Period size: 19  Copynumber: 2.1  Consensus size: 19

        991 AAATCCAGCT

                                
       1001 TTGGGCTTAC-TTTAGGACA
          1 TTGGGCTTACATTTAGG-CA

                    *          
       1020 TTGGGCTTGCATTTAGGCA
          1 TTGGGCTTACATTTAGGCA

              
       1039 TT
          1 TT

       1041 TTAGCTTTAG


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  19   13  0.68
  20    6  0.32

ACGTcount: A:0.17, C:0.15, G:0.28, T:0.40


Consensus pattern (19 bp):   
TTGGGCTTACATTTAGGCA

Done.