Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006848.1 Corchorus olitorius cultivar O-4 contig06873, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 747

Length: 1245
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.40

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:86 original size:24 final size:25

Alignment explanation


    Indices: 44--90  Score: 69
    Period size: 24  Copynumber: 1.9  Consensus size: 25

         34 CTTAACACAT

                                     
         44 GTGAAATAAGTTTTATGAATGGGGC
          1 GTGAAATAAGTTTTATGAATGGGGC

                  *       *        
         69 GTGAAANAA-TTTTGTGAATGGG
          1 GTGAAATAAGTTTTATGAATGGG

         91 TCATGGGGGG


Statistics
Matches: 20,  Mismatches: 2, Indels: 1
        0.87            0.09        0.04

Matches are distributed among these distances:
  24   12  0.60
  25    8  0.40

ACGTcount: A:0.32, C:0.02, G:0.32, T:0.32


Consensus pattern (25 bp):   
GTGAAATAAGTTTTATGAATGGGGC
Done.