Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006850.1 Corchorus olitorius cultivar O-4 contig06875, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2077
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35


Found at i:331 original size:45 final size:45

Alignment explanation


    Indices: 280--376  Score: 133
    Period size: 45  Copynumber: 2.2  Consensus size: 45

        270 AGCAACAATT

                                      **             *   
        280 AATATTAGCTTTATTTTAATGAATTATGTAGAGATGGAGGAGTAG
          1 AATATTAGCTTTATTTTAATGAATTACCTAGAGATGGAGGACTAG

                             *            *        *     
        325 AATATTAGCTTTATTTTGATGAATTACCTATAGATGGAGTACTAG
          1 AATATTAGCTTTATTTTAATGAATTACCTAGAGATGGAGGACTAG

                    
        370 AAT-TTAG
          1 AATATTAG

        377 GTAATGCACT


Statistics
Matches: 46,  Mismatches: 6, Indels: 1
        0.87            0.11        0.02

Matches are distributed among these distances:
  44    4  0.09
  45   42  0.91

ACGTcount: A:0.35, C:0.05, G:0.21, T:0.39


Consensus pattern (45 bp):   
AATATTAGCTTTATTTTAATGAATTACCTAGAGATGGAGGACTAG
Done.