Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006853.1 Corchorus olitorius cultivar O-4 contig06878, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 681

Length: 1135
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.34


Found at i:980 original size:15 final size:14

Alignment explanation


    Indices: 960--997  Score: 58
    Period size: 15  Copynumber: 2.6  Consensus size: 14

        950 AAATGGTTGC

                           
        960 TTTGTTTTGTTTCGG
          1 TTTGTTTTGTTTC-G

                          
        975 TTTGTTTTGTTTCG
          1 TTTGTTTTGTTTCG

                *    
        989 TTTGCTTTG
          1 TTTGTTTTG

        998 ATGTTTTATT


Statistics
Matches: 22,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  14    9  0.41
  15   13  0.59

ACGTcount: A:0.00, C:0.08, G:0.24, T:0.68


Consensus pattern (14 bp):   
TTTGTTTTGTTTCG
Done.