Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006857.1 Corchorus olitorius cultivar O-4 contig06882, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 655

Length: 1093
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33


Found at i:356 original size:11 final size:11

Alignment explanation


    Indices: 340--364  Score: 50
    Period size: 11  Copynumber: 2.3  Consensus size: 11

        330 TTTTTGTTTT

                       
        340 ATATAATAATA
          1 ATATAATAATA

                       
        351 ATATAATAATA
          1 ATATAATAATA

               
        362 ATA
          1 ATA

        365 ACTTAAAGTT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   14  1.00

ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36


Consensus pattern (11 bp):   
ATATAATAATA
Done.